Home Hello, Demo BxGegomicsLOGOUT
Review Project Data
293T Expression w/ FSK and ACREB
Selected Project Data (0)
SOX
cell lines from 9 cancer tissues (NCI-60)
Selected Project Data (0)
ChIP-chip of CREB Binding in Human
Selected Project Data (0)
H3K4me3 ChIP-Seq in ES, iPS
Selected Project Data (0)
hES and hiPS Expression
Selected Project Data (0)
Hormone-starved MCF7/BUS cell
Selected Project Data (0)
Human CRE Prediction
Selected Project Data (0)
Human ES Cell ChIP-chip
Selected Project Data (0)
Human Gene Atlas
Selected Project Data (0)
sox
Human Islet w/ FSK
Selected Project Data (0)
Illumina Human Body Map 2.0
Selected Project Data (0)
ENSG00000235941
CD209 ENSG00000090659
sox
MMP9
FGF
MIN6 beta cell line, FSK and ACREB
Selected Project Data (0)
nephrin
Mouse Fasting Liver and Hepatocyte w/ FSK
Selected Project Data (0)
Hepatocyte FSK Up
Mouse Gene Atlas
Selected Project Data (0)
test
Prostate cancer metastasis
Selected Project Data (0)
Significant Change
down regulated

220184_at / NANOG

Project: hES and hiPS Expression • Platform: Human Genome U133 Plus 2.0 Array

Actions

Correlation • Search this gene in other projects • View in Gene Atlas • Export

Plot

Plot Type

 The system will plot all data points and average bars
The system will plot all data points and the error bars below:
• Top bar: Average + Standard deviation
• Middle bar: Average
• Bottom bar: Average - Standard deviation
Average value of the data points with standard deviation
Average value of the data points
Top bar: Average + Standard deviation
Middle bar: Average
Bottom bar: Average - Standard deviation
Table View

Advanced Options

Color
Chart Style
 Add a thin black border line around each data point
 Bold the column headers
Plot Title Prefix
Plot Title
Y-Axis Title
Min. Value of Y-Axis
 Based on Data    Zero   
Y-axis Transformation
Value To Be Added
For Log Transformation

Preferences

Remember my preferences for all projects
Save

Close this window to apply sample selection.


Remember the sample selections of this project?
 No    Expression Plots    Expression Plots and Heat Map   

Select All
Experiments: FIBROBLAST
Condition #1: GM
Condition #2: GM
Avg. Condition #2: GM
• GSM574058
• GSM574059
Condition #1: PDB
Condition #2: PDB
Avg. Condition #2: PDB
• GSM574060
Experiments: hES
Condition #1: BG
Condition #2: 01
Avg. Condition #2: 01
• GSM574061
• GSM574062
• GSM574063
• GSM574064
• GSM574065
Condition #2: 3
Avg. Condition #2: 3
• GSM574066
• GSM574067
Condition #1: H9
Condition #2: H9
Avg. Condition #2: H9
• GSM574068
• GSM574069
Condition #1: WIBR
Condition #2: 01
Avg. Condition #2: 01
• GSM574070
• GSM574071
Condition #2: 2
Avg. Condition #2: 2
• GSM574072
• GSM574073
Condition #2: 3
Avg. Condition #2: 3
• GSM574074
• GSM574075
Condition #2: 7
Avg. Condition #2: 7
• GSM574076
• GSM574077
Experiments: hiPS
Condition #1: 4
Condition #2: 4
Avg. Condition #2: 4
• GSM574078
• GSM574079
Condition #1: A1
Condition #2: A1
Avg. Condition #2: A1
• GSM574080
• GSM574081
Condition #1: A6
Condition #2: A6
Avg. Condition #2: A6
• GSM574082
• GSM574083
Condition #1: C1
Condition #2: C1
Avg. Condition #2: C1
• GSM574084
• GSM574085
Condition #1: PDB1lox_17puro
Condition #2: 5
Avg. Condition #2: 5
• GSM574088
• GSM574089
Condition #2: 10
Avg. Condition #2: 10
• GSM574086
Condition #2: 33
Avg. Condition #2: 33
• GSM574087
Condition #1: PDB1lox_21puro
Condition #2: 20
Avg. Condition #2: 20
• GSM574090
Condition #2: 26
Avg. Condition #2: 26
• GSM574091
• GSM574092
Condition #2: 28
Avg. Condition #2: 28
• GSM574093
Condition #1: PDB2lox
Condition #2: 5
Avg. Condition #2: 5
• GSM574099
Condition #2: 17
Avg. Condition #2: 17
• GSM574094
• GSM574095
Condition #2: 21
Avg. Condition #2: 21
• GSM574096
• GSM574097
Condition #2: 22
Avg. Condition #2: 22
• GSM574098

Selected Samples: 42 out of 42

Data

No.Original NameData ValueDisplay NameTypeLog ScaleStatistical Value
Categories		ExperimentsCondition #1Condition #2
1.ID_REF220184_atID_REFIdentifier
2.GSM57405811GSM574058DataLinearFIBROBLASTGMGM
3.GSM57405911GSM574059DataLinearFIBROBLASTGMGM
4.GSM57406032GSM574060DataLinearFIBROBLASTPDBPDB
5.GSM574061877GSM574061DataLinearhESBG01
6.GSM5740623,890GSM574062DataLinearhESBG01
7.GSM5740634,461GSM574063DataLinearhESBG01
8.GSM5740644,101GSM574064DataLinearhESBG01
9.GSM5740655,449GSM574065DataLinearhESBG01
10.GSM5740662,744GSM574066DataLinearhESBG3
11.GSM5740672,778GSM574067DataLinearhESBG3
12.GSM5740687,407GSM574068DataLinearhESH9H9
13.GSM5740697,236GSM574069DataLinearhESH9H9
14.GSM5740702,323GSM574070DataLinearhESWIBR01
15.GSM5740712,624GSM574071DataLinearhESWIBR01
16.GSM5740721,983GSM574072DataLinearhESWIBR2
17.GSM574073934GSM574073DataLinearhESWIBR2
18.GSM5740742,385GSM574074DataLinearhESWIBR3
19.GSM5740751,721GSM574075DataLinearhESWIBR3
20.GSM5740763,264GSM574076DataLinearhESWIBR7
21.GSM5740773,192GSM574077DataLinearhESWIBR7
22.GSM5740785,678GSM574078DataLinearhiPS44
23.GSM5740795,136GSM574079DataLinearhiPS44
24.GSM5740808,124GSM574080DataLinearhiPSA1A1
25.GSM5740815,592GSM574081DataLinearhiPSA1A1
26.GSM5740826,193GSM574082DataLinearhiPSA6A6
27.GSM5740833,404GSM574083DataLinearhiPSA6A6
28.GSM5740844,007GSM574084DataLinearhiPSC1C1
29.GSM5740855,602GSM574085DataLinearhiPSC1C1
30.GSM5740864,689GSM574086DataLinearhiPSPDB1lox_17puro10
31.GSM5740875,107GSM574087DataLinearhiPSPDB1lox_17puro33
32.GSM5740884,958GSM574088DataLinearhiPSPDB1lox_17puro5
33.GSM5740892,661GSM574089DataLinearhiPSPDB1lox_17puro5
34.GSM5740904,900GSM574090DataLinearhiPSPDB1lox_21puro20
35.GSM5740914,464GSM574091DataLinearhiPSPDB1lox_21puro26
36.GSM5740923,995GSM574092DataLinearhiPSPDB1lox_21puro26
37.GSM5740935,185GSM574093DataLinearhiPSPDB1lox_21puro28
38.GSM5740946,661GSM574094DataLinearhiPSPDB2lox17
39.GSM5740951,691GSM574095DataLinearhiPSPDB2lox17
40.GSM5740966,324GSM574096DataLinearhiPSPDB2lox21
41.GSM5740971,686GSM574097DataLinearhiPSPDB2lox21
42.GSM5740984,537GSM574098DataLinearhiPSPDB2lox22
43.GSM5740995,377GSM574099DataLinearhiPSPDB2lox5
Probe Set ID:220184_at
GeneChip Array:Human Genome U133 Plus 2.0 Array
Species Scientific Name:Homo sapiens
Annotation Date:29-Oct-12
Sequence Type:Exemplar sequence
Sequence Source:GenBank
Transcript ID(Array Design):g13376297
Target Description:gb:NM_024865.1 /DB_XREF=gi:13376297 /GEN=FLJ12581 /FEA=FLmRNA /CNT=16 /TID=Hs.326290.0 /TIER=FL /STK=2 /UG=Hs.326290 /LL=79923 /DEF=Homo sapiens hypothetical protein FLJ12581 (FLJ12581), mRNA. /PROD=hypothetical protein FLJ12581 /FL=gb:NM_024865.1
Representative Public ID:NM_024865
Archival UniGene Cluster:Hs.326290
UniGene ID:Hs.635882
Genome Version:February 2009 (Genome Reference Consortium GRCh37)
Alignments:chr12:7941994-7948655 (+) // 84.34 // p13.31 /// chr15:35375426-35377509 (-) // 83.35 // q14
Gene Title:Nanog homeobox
Gene Symbol:NANOG
Chromosomal Location:chr12p13.31
Unigene Cluster Type:full length
Ensembl:
Entrez Gene:79923
SwissProt:A8K4D1, E9PL07, F5GZI2, Q6NSW7, Q8N7R0, Q9H9S0
EC:
OMIM:607937
RefSeq Protein ID:NP_079141
RefSeq Transcript ID:NM_024865
FlyBase:
AGI:
WormBase:
MGI Name:
RGD Name:
SGD accession number:
Gene Ontology Biological Process:0001714 // endodermal cell fate specification // inferred from direct assay /// 0006351 // transcription, DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0008283 // cell proliferation // inferred from mutant phenotype /// 0009790 // embryo development // inferred from expression pattern /// 0010468 // regulation of gene expression // inferred from mutant phenotype /// 0030154 // cell differentiation // inferred from expression pattern /// 0035019 // somatic stem cell maintenance // inferred from mutant phenotype /// 0045595 // regulation of cell differentiation // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay
Gene Ontology Cellular Component:0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from direct assay
Gene Ontology Molecular Function:0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation
Pathway:
InterPro:
Trans Membrane:
QTL:
Annotation Description:This probe set was annotated using the Matching Probes based pipeline to a Entrez Gene identifier using 1 transcripts. // false // Matching Probes // A
Annotation Transcript Cluster:AB093576(11)
Transcript Assignments:AB093576 // Homo sapiens mRNA for homeobox transcription factor Nanog, complete cds. // gb // 11
Annotation Notes:ENST00000229307 // ensembl // 8 // Cross Hyb Matching Probes /// NM_024865 // refseq // 8 // Cross Hyb Matching Probes